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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ATAC-seq
22
ChIP-seq
19
total RNA-seq
5
pCHi-C
2
WGBS
1
DNase-seq
1
RRBS
Assay category
30
DNA accessibility
22
DNA binding
19
Transcription
3
DNA methylation
Target of assay
8
control
8
histone
8
histone modification
6
transcription factor
4
broad histone mark
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
31
February, 2023
21
October, 2019
9
November, 2018
7
December, 2018
7
January, 2019
June, 2019
1
February, 2020
1
July, 2019
1
March, 2020
1
October, 2017
Available data
41
bed narrowPeak
24
bam
24
fastq
16
bigWig
13
bigBed narrowPeak
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
79
Homo sapiens
Biosample type
78
tissue
1
primary cell
Organ
942
pancreas
789
liver
666
connective tissue
504
epithelium
490
adipose tissue
358
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
79
AMP
Genome assembly (visualization)
42
hg19
16
GRCh38
Lab
79
AMP-T2D consortium
month_released!
June, 2019
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
79 results
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ATAC-seq
ChIP-seq
total RNA-seq
pCHi-C
WGBS
DNase-seq
RRBS
tissue
spleen
1
20
1
2
1
islet of Langerhans
1
2
14
4
retina
15
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
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