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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
417
total RNA-seq
75
ChIP-seq
34
ATAC-seq
6
WGBS
6
pCHi-C
3
small RNA-seq
1
DNase-seq
1
RRBS
Assay category
420
Transcription
75
DNA binding
35
DNA accessibility
7
DNA methylation
Target of assay
34
histone
34
histone modification
24
control
20
broad histone mark
17
transcription factor
14
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
32
February, 2023
23
October, 2018
22
October, 2019
13
July, 2019
June, 2019
3
February, 2020
1
August, 2018
1
January, 2018
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
441
bam
424
bigWig
406
tsv
44
fastq
39
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
5
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
2
bed broadPeak
1
bedpe bed3+
1
bigBed broadPeak
Organism
543
Homo sapiens
Biosample type
539
tissue
3
primary cell
1
in vitro differentiated cells
Organ
934
pancreas
789
liver
665
connective tissue
503
epithelium
489
adipose tissue
358
heart
273
kidney
256
brain
229
vasculature
225
blood vessel
159
bone element
139
artery
90
limb
69
blood
69
bodily fluid
54
eye
53
musculature of body
43
nerve
37
embryo
25
spleen
22
vein
19
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
543
AMP
Genome assembly (visualization)
453
hg19
423
GRCh38
Lab
543
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
month_released!
June, 2019
BIOSAMPLE
ASSAY
543 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
DNase-seq
RRBS
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
islet of Langerhans
14
2
1
4
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
1
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
retinal pigment epithelial cell
1
in vitro differentiated cells
white fat cell
1
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