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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
15
total RNA-seq
1
GRO-seq
1
RRBS
Assay category
18
DNA binding
15
Transcription
1
DNA methylation
Target of assay
12
histone
12
histone modification
8
narrow histone mark
7
control
broad histone mark
3
transcription factor
Date released
12
December, 2017
10
February, 2018
8
August, 2021
2
July, 2019
2
May, 2021
1
January, 2018
Available data
33
bam
26
bigWig
23
fastq
15
tsv
10
bed narrowPeak
2
bed bed3+
1
bed bedMethyl
1
bigBed bedMethyl
Organism
35
Homo sapiens
Biosample type
25
in vitro differentiated cells
8
cell line
1
primary cell
1
tissue
Organ
864
pancreas
747
liver
626
connective tissue
470
adipose tissue
460
epithelium
301
heart
258
kidney
186
brain
184
vasculature
180
blood vessel
159
bone element
125
artery
69
blood
69
bodily fluid
56
limb
54
eye
37
musculature of body
33
embryo
27
nerve
21
spleen
20
lung
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
35
AMP
Genome assembly (visualization)
27
hg19
26
GRCh38
1
hg18
Lab
35
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
month_released!
June, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
35 results
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ChIP-seq
total RNA-seq
GRO-seq
RRBS
in vitro differentiated cells
pancreatic endoderm
14
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
primary cell
pericardium fibroblast
1
tissue
pericardium
1
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