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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
34
ATAC-seq
18
snATAC-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
80
DNA binding
52
DNA accessibility
Target of assay
134
histone
134
histone modification
broad histone mark
60
narrow histone mark
12
transcription factor
8
control
5
RNA binding protein
Date released
102
May, 2021
18
February, 2023
18
May, 2022
16
January, 2021
Available data
68
bed narrowPeak
58
bam
58
bigWig
40
tagAlign
18
fastq
Organism
154
Homo sapiens
Biosample type
77
primary cell
40
tissue
32
in vitro differentiated cells
5
cell line
Organ
39
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
91
T1D
63
AMP
Genome assembly (visualization)
76
hg19
40
GRCh38
Lab
1820
AMP-T2D consortium
154
Kyle Gaulton, UCSD
147
Klaus Kaestner, Upenn
82
Katalin Susztak, Upenn
27
Bing Ren, UCSD
20
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
June, 2019
target.investigated_as!
broad histone mark
assay_slims!
Transcription
BIOSAMPLE
ASSAY
154 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
40
1
CD8-positive, alpha-beta T cell
13
1
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 11 more…
tissue
islet of Langerhans
29
6
pancreas
4
thymus
1
in vitro differentiated cells
embryonic stem cell
27
5
cell line
EndoC_BH1
3
2
See all biosamples
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