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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
604
ChIP-seq
260
ATAC-seq
165
single cell RNA-seq
87
RNA microarray
27
WGBS
25
pCHi-C
18
snATAC-seq
16
Hi-C
16
small RNA-seq
15
DNase-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1218
Transcription
604
DNA binding
297
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
229
August, 2021
211
August, 2017
203
October, 2019
193
May, 2020
June, 2019
120
July, 2018
95
February, 2023
77
July, 2019
66
May, 2022
59
May, 2019
55
October, 2018
47
September, 2023
45
December, 2017
43
April, 2019
40
March, 2020
40
May, 2021
40
November, 2017
40
November, 2019
26
November, 2018
25
February, 2020
20
May, 2024
15
May, 2023
13
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
3
January, 2019
2
January, 2018
1
August, 2022
Available data
1522
bam
1356
bigWig
1076
tsv
568
bed narrowPeak
332
fastq
194
bigBed narrowPeak
162
tagAlign
157
txt
64
xls
36
bed bed3+
30
bed broadPeak
25
bed bedMethyl
25
bigBed bedMethyl
13
bigBed broadPeak
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2288
Homo sapiens
Biosample type
2292
tissue
919
primary cell
643
cell line
338
in vitro differentiated cells
9
stem cell
Organ
526
connective tissue
467
adipose tissue
460
pancreas
336
liver
229
heart
221
kidney
170
brain
158
bone element
94
blood vessel
94
vasculature
57
artery
56
limb
53
eye
34
musculature of body
27
nerve
21
spleen
16
skeleton
15
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2214
AMP
47
KPMP
31
T1D
Genome assembly (visualization)
1454
GRCh38
1410
hg19
Lab
1979
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
20
Patrick T. Ellinor, Broad
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
22
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
June, 2019
target.investigated_as!
broad histone mark
lab.title!
Xin Sun, UCSD
BIOSAMPLE
ASSAY
2292 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
DNase-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
57
68
4
7
3
1
1
1
4
adipose tissue
382
2
3
3
1
liver
167
123
20
1
3
1
1
1
2
1
kidney
49
17
75
64
6
1
1
1
bone element
84
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