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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
20
ChIP-seq
2
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
47
DNA accessibility
20
DNA binding
Target of assay
20
histone
20
histone modification
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
35
February, 2023
12
October, 2019
5
May, 2019
3
July, 2019
2
August, 2021
2
February, 2020
June, 2019
Available data
86
bam
69
bigWig
58
bed narrowPeak
58
tsv
9
bigBed narrowPeak
6
tagAlign
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
125
Homo sapiens
Biosample type
66
cell line
57
tissue
2
primary cell
Organ
864
pancreas
747
liver
626
connective tissue
470
adipose tissue
460
epithelium
301
heart
258
kidney
186
brain
184
vasculature
180
blood vessel
159
bone element
125
artery
69
blood
69
bodily fluid
56
limb
54
eye
37
musculature of body
33
embryo
27
nerve
21
spleen
20
lung
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
125
AMP
Genome assembly (visualization)
112
GRCh38
77
hg19
Lab
125
AMP-T2D consortium
month_released!
June, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
125 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
5
tibial artery
1
1
9
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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