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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
570
ChIP-seq
189
total RNA-seq
24
ATAC-seq
8
snATAC-seq
5
WGBS
4
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
570
DNA binding
193
Transcription
36
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
389
transcription factor
114
control
104
histone modification
103
histone
82
recombinant protein
68
RNA binding protein
61
narrow histone mark
broad histone mark
33
chromatin remodeller
2
other context
2
other post-translational modification
Date released
307
November, 2017
194
May, 2020
68
November, 2018
53
December, 2017
40
May, 2022
35
August, 2017
33
August, 2021
28
December, 2018
23
January, 2019
10
July, 2019
8
January, 2021
5
December, 2019
4
October, 2019
3
February, 2021
3
March, 2020
June, 2019
1
February, 2020
1
January, 2018
Available data
710
bam
645
bigWig
500
fastq
464
bed narrowPeak
389
bigBed narrowPeak
174
tsv
68
tagAlign
53
bed broadPeak
53
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
816
Homo sapiens
Biosample type
453
cell line
336
tissue
19
primary cell
8
in vitro differentiated cells
Organ
864
pancreas
747
liver
626
connective tissue
470
adipose tissue
460
epithelium
301
heart
258
kidney
186
brain
184
vasculature
180
blood vessel
159
bone element
125
artery
69
blood
69
bodily fluid
56
limb
54
eye
37
musculature of body
33
embryo
27
nerve
21
spleen
20
lung
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
808
AMP
8
T1D
Genome assembly (visualization)
648
hg19
555
GRCh38
Lab
738
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
8
Kyle Gaulton, UCSD
Audit category:
28
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
month_released!
June, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
816 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
369
14
1
1
2
2
2
1
GM12878
60
1
tissue
liver
123
167
20
3
2
1
1
1
1
1
right lobe of liver
7
3
1
1
2
2
primary cell
hepatocyte
3
5
1
peripheral blood mononuclear cell
8
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
8
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