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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
487
ChIP-seq
189
total RNA-seq
23
ATAC-seq
5
WGBS
4
DNase-seq
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
487
DNA binding
193
Transcription
27
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
broad histone mark
chromatin remodeller
2
other context
2
other post-translational modification
Date released
292
November, 2017
194
May, 2020
50
December, 2017
48
November, 2018
40
May, 2022
35
August, 2017
33
August, 2021
10
July, 2019
5
December, 2019
5
January, 2019
4
October, 2019
3
February, 2021
3
March, 2020
June, 2019
1
December, 2018
1
February, 2020
Available data
627
bam
567
bigWig
417
fastq
387
bed narrowPeak
312
bigBed narrowPeak
174
tsv
68
tagAlign
49
bed broadPeak
49
bigBed broadPeak
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
724
Homo sapiens
Biosample type
372
cell line
334
tissue
11
primary cell
7
in vitro differentiated cells
Organ
864
pancreas
724
liver
624
connective tissue
470
adipose tissue
459
epithelium
301
heart
258
kidney
186
brain
184
vasculature
180
blood vessel
159
bone element
125
artery
59
blood
59
bodily fluid
56
limb
54
eye
37
musculature of body
33
embryo
27
nerve
21
spleen
20
lung
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
724
AMP
Genome assembly (visualization)
570
hg19
480
GRCh38
Lab
654
AMP-T2D consortium
40
Karen Mohlke, UNC
30
Bing Ren, UCSD
Audit category:
25
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
7
missing controlled_by
Audit category:
10
inconsistent control read length
month_released!
June, 2019
target.investigated_as!
broad histone mark
chromatin remodeller
BIOSAMPLE
ASSAY
724 results
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ChIP-seq
total RNA-seq
ATAC-seq
WGBS
DNase-seq
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
349
14
1
1
2
2
2
1
tissue
liver
121
167
20
3
2
1
1
1
1
1
right lobe of liver
7
3
1
1
2
2
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
7
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