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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
13
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
13
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
25
histone
25
histone modification
broad histone mark
9
narrow histone mark
4
control
Date released
June, 2019
14
August, 2017
10
July, 2019
5
March, 2020
3
May, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
15
bigWig
10
bam
9
tsv
7
bed narrowPeak
7
tagAlign
5
bed broadPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
bigBed narrowPeak
2
fastq
2
hic
1
bed bed3+
1
txt
Organism
37
Homo sapiens
Biosample type
34
tissue
3
primary cell
Organ
864
pancreas
747
liver
626
connective tissue
470
adipose tissue
460
epithelium
301
heart
258
kidney
186
brain
184
vasculature
180
blood vessel
159
bone element
125
artery
69
blood
69
bodily fluid
56
limb
54
eye
37
musculature of body
33
embryo
27
nerve
21
spleen
20
lung
16
skeleton
13
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
37
AMP
Genome assembly (visualization)
20
hg19
8
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
1
audit script error
month_released!
June, 2019
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
10
1
4
1
1
1
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
muscle of leg
3
1
left ventricle myocardium
1
primary cell
skeletal muscle satellite cell
1
1
skeletal muscle cell
1
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