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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
82
ChIP-seq
Assay category
82
DNA binding
Target of assay
416
transcription factor
370
histone
370
histone modification
190
broad histone mark
179
narrow histone mark
148
control
89
recombinant protein
82
RNA binding protein
34
chromatin remodeller
3
nucleotide modification
2
other context
2
other post-translational modification
Date released
37
November, 2017
21
November, 2018
6
August, 2017
6
January, 2019
5
May, 2021
June, 2019
2
December, 2017
2
December, 2018
1
August, 2021
1
May, 2019
1
November, 2019
Available data
76
bam
75
bed narrowPeak
75
bigWig
74
fastq
69
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
1
tar
Organism
82
Homo sapiens
Biosample type
65
cell line
tissue
11
in vitro differentiated cells
6
primary cell
Organ
56
liver
10
blood
10
bodily fluid
6
epithelium
4
connective tissue
3
brain
2
vasculature
1
blood vessel
1
kidney
1
pancreas
Project
82
AMP
Genome assembly (visualization)
74
hg19
69
GRCh38
Lab
76
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
month_released!
June, 2019
biosample_type!
tissue
BIOSAMPLE
ASSAY
82 results
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Clear Filters
ChIP-seq
cell line
HepG2
54
GM12878
10
EndoC_BH1
1
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
hepatocyte
2
primary cell
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
kidney epithelial cell
1
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