Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
218
DNA binding
1
DNA accessibility
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
28
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
84
October, 2019
28
May, 2019
15
October, 2017
1
July, 2019
Available data
197
bam
173
bigWig
171
bed narrowPeak
118
tagAlign
95
bigBed narrowPeak
18
fastq
15
bed broadPeak
6
bigBed broadPeak
1
tagAlign bed3+
Organism
219
Homo sapiens
Biosample type
210
tissue
9
primary cell
Organ
552
liver
220
pancreas
219
brain
153
connective tissue
134
heart
130
epithelium
103
vasculature
100
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
53
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
18
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
219
AMP
Genome assembly (visualization)
171
GRCh38
124
hg19
Lab
219
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
month_released!
March, 2019
BIOSAMPLE
ASSAY
219 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
FAIRE-seq
tissue
layer of hippocampus
23
brain
20
substantia nigra
16
angular gyrus
15
caudate nucleus
15
+ See 64 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
Download