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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
10
total RNA-seq
5
STARR-seq
2
Hi-C
1
whole genome sequencing assay
Assay category
10
Transcription
2
3D chromatin structure
1
DNA sequencing
Date released
18
August, 2021
March, 2019
Available data
10
tsv
2
bedpe bed3+
1
hic
1
vcf
Organism
18
Homo sapiens
Biosample type
16
cell line
2
tissue
Organ
13
liver
2
kidney
2
pancreas
Project
18
AMP
Genome assembly (visualization)
1
hg19
Lab
2253
AMP-T2D consortium
324
Klaus Kaestner, Upenn
189
Kyle Gaulton, UCSD
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
18
Bing Ren, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
7
Struan F.A. Grant, CHOP
4
Anna Gloyn, Oxford
1
ITG
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
March, 2019
award.project!
LungMap
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
18 results
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total RNA-seq
STARR-seq
Hi-C
whole genome sequencing assay
cell line
HepG2
9
2
1
1
HEK293T
2
Synthesized DNA
1
tissue
islet of Langerhans
1
1
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