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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
19
total RNA-seq
9
ChIP-seq
8
snATAC-seq
4
pCHi-C
2
ATAC-seq
1
RRBS
Assay category
19
Transcription
10
DNA accessibility
9
DNA binding
1
DNA methylation
Target of assay
7
control
2
histone
2
histone modification
2
narrow histone mark
Date released
21
October, 2019
8
January, 2021
4
February, 2023
3
January, 2019
3
November, 2018
1
February, 2020
1
January, 2018
1
July, 2019
1
June, 2019
Available data
bed narrowPeak
67
bam
61
bigWig
60
bigBed narrowPeak
60
fastq
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
43
Homo sapiens
Biosample type
26
tissue
10
primary cell
7
cell line
Organ
727
pancreas
609
connective tissue
478
adipose tissue
373
epithelium
350
liver
202
heart
171
kidney
151
bone element
103
vasculature
101
blood vessel
83
brain
67
artery
36
musculature of body
30
limb
28
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
11
spleen
9
vein
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
35
AMP
8
T1D
Genome assembly (visualization)
2
hg19
Lab
35
AMP-T2D consortium
8
Kyle Gaulton, UCSD
month_released!
March, 2019
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
43 results
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total RNA-seq
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
RRBS
tissue
islet of Langerhans
14
2
4
1
retina
3
pigmented layer of retina
2
primary cell
peripheral blood mononuclear cell
8
retinal pigment epithelial cell
1
1
cell line
GM12878
6
1
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