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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
146
ChIP-seq
18
ATAC-seq
6
total RNA-seq
3
RRBS
2
WGBS
1
Hi-C
1
pCHi-C
Assay category
146
DNA binding
18
DNA accessibility
6
Transcription
5
DNA methylation
1
3D chromatin structure
Target of assay
139
control
5
transcription factor
2
RNA binding protein
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
1
recombinant protein
Date released
47
November, 2017
27
October, 2018
24
May, 2022
23
August, 2017
22
December, 2017
8
February, 2018
7
November, 2018
6
September, 2017
5
December, 2018
4
January, 2019
3
October, 2017
1
August, 2018
March, 2019
Available data
2782
bam
bigWig
1522
bed narrowPeak
1330
tsv
948
fastq
933
bigBed narrowPeak
298
tagAlign
272
bed broadPeak
236
bed bed3+
236
bigBed broadPeak
161
txt
64
xls
26
bed bedMethyl
26
bigBed bedMethyl
19
bedpe bed3+
16
hic
11
bed bed3
7
bed bedgraph
6
csv
3
tar
2
ibed
1
hdf5
1
tagAlign bed3+
1
vcf
Organism
176
Homo sapiens
Biosample type
primary cell
97
tissue
55
cell line
24
in vitro differentiated cells
1
stem cell
Organ
72
liver
42
pancreas
27
connective tissue
21
adipose tissue
8
embryo
8
spleen
6
blood
6
bodily fluid
3
brain
3
epithelium
2
musculature of body
Project
177
AMP
Genome assembly (visualization)
30
hg19
9
GRCh38
Lab
153
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
month_released!
March, 2019
files.file_type!
bigWig
biosample_type!
primary cell
BIOSAMPLE
ASSAY
177 results
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ChIP-seq
ATAC-seq
total RNA-seq
RRBS
WGBS
Hi-C
pCHi-C
tissue
islet of Langerhans
7
18
6
liver
17
1
1
subcutaneous adipose tissue
10
body of pancreas
8
omental fat pad
8
+ See 6 more…
cell line
HepG2
48
1
GM12878
6
in vitro differentiated cells
adipocyte
6
pancreatic endoderm
6
Hepatic endoderm
2
definitive endodermal cell
2
primitive gut cell
2
+ See 6 more…
stem cell
hESC
1
See all biosamples
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