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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
20
total RNA-seq
4
WGBS
3
Hi-C
2
ATAC-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
pCHi-C
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
120
DNA binding
21
Transcription
6
DNA methylation
3
3D chromatin structure
3
DNA accessibility
1
DNA sequencing
Target of assay
95
control
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
5
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
47
November, 2017
36
August, 2017
23
May, 2020
20
May, 2022
13
December, 2017
9
August, 2021
3
February, 2021
2
July, 2019
1
December, 2018
1
March, 2020
1
November, 2018
1
October, 2019
Available data
681
bam
bigWig
465
fastq
441
bed narrowPeak
358
bigBed narrowPeak
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
157
Homo sapiens
Biosample type
94
tissue
59
cell line
3
primary cell
1
in vitro differentiated cells
Organ
309
pancreas
214
epithelium
211
kidney
157
liver
110
connective tissue
101
bone element
71
heart
71
vasculature
70
blood vessel
63
adipose tissue
52
artery
50
brain
50
eye
28
limb
25
musculature of body
19
lung
16
skeleton
14
blood
14
bodily fluid
11
nerve
8
embryo
8
spleen
7
vein
4
gonad
4
ovary
1
bone marrow
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
thymus
Project
157
AMP
Genome assembly (visualization)
8
hg19
3
GRCh38
Lab
129
AMP-T2D consortium
20
Karen Mohlke, UNC
8
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
1
missing controlled_by
month_released!
March, 2019
files.file_type!
bigWig
tsv
BIOSAMPLE
ASSAY
157 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
Hi-C
ATAC-seq
RRBS
STARR-seq
DNase-seq
pCHi-C
single cell RNA-seq
whole genome sequencing assay
tissue
liver
63
20
3
1
1
1
right lobe of liver
3
1
1
cell line
HepG2
52
2
1
2
1
1
primary cell
hepatocyte
1
1
Liver fetal (hepatocyte)
1
in vitro differentiated cells
hepatocyte
1
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