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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
79
ChIP-seq
5
Hi-C
Assay category
79
DNA binding
5
3D chromatin structure
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
13
August, 2017
4
July, 2019
3
October, 2019
Available data
3182
bam
2960
bigWig
1608
bed narrowPeak
1600
tsv
1345
fastq
833
bigBed narrowPeak
398
tagAlign
161
txt
153
zippedFastqFolder
115
bed broadPeak
79
bigBed broadPeak
69
bed bed3+
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
tagAlign bed3+
1
vcf
Organism
84
Homo sapiens
Biosample type
59
cell line
25
primary cell
Organ
59
liver
9
brain
8
epithelium
8
vasculature
6
blood vessel
2
vein
1
connective tissue
1
pancreas
Project
84
AMP
Genome assembly (visualization)
84
hg19
63
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
13
inconsistent control read length
2
inconsistent assembly
month_released!
March, 2019
assay_title!
DNase-seq
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
Hi-C
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
endothelial cell of umbilical vein
2
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