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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
DNase-seq
73
ChIP-seq
Assay category
73
DNA binding
Target of assay
46
transcription factor
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
13
August, 2017
2
October, 2019
Available data
2971
bam
2770
bigWig
1574
tsv
1437
bed narrowPeak
1326
fastq
738
bigBed narrowPeak
280
tagAlign
161
txt
153
zippedFastqFolder
100
bed broadPeak
73
bigBed broadPeak
66
bed bed3+
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
23
bedpe bed3+
22
hic
11
bed bed3
8
csv
7
bed bedgraph
4
tar
3
cool
2
hdf5
2
ibed
1
vcf
Organism
73
Homo sapiens
Biosample type
58
cell line
15
primary cell
Organ
58
liver
brain
6
epithelium
6
vasculature
4
blood vessel
2
vein
Project
73
AMP
Genome assembly (visualization)
73
hg19
56
GRCh38
Lab
73
AMP-T2D consortium
Audit category:
13
inconsistent control read length
1
inconsistent assembly
month_released!
March, 2019
assay_title!
DNase-seq
organ_slims!
brain
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
cell line
HepG2
58
primary cell
skeletal muscle myoblast
13
endothelial cell of umbilical vein
2
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