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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
DNase-seq
49
ChIP-seq
Assay category
205
DNA accessibility
49
DNA binding
Target of assay
49
transcription factor
30
histone
histone modification
16
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
187
June, 2019
47
November, 2017
9
November, 2018
7
October, 2019
3
August, 2017
1
November, 2020
Available data
2394
bam
2119
bigWig
1469
tsv
1051
fastq
912
bed narrowPeak
646
bigBed narrowPeak
255
bed broadPeak
254
bigBed broadPeak
231
bed bed3+
158
txt
153
zippedFastqFolder
64
xls
63
tagAlign
36
bed bedMethyl
36
bigBed bedMethyl
18
hic
16
bedpe bed3+
8
csv
7
bed bed3
5
hdf5
4
tar
3
cool
1
vcf
Organism
254
Homo sapiens
Biosample type
176
tissue
45
cell line
33
primary cell
in vitro differentiated cells
Organ
78
kidney
49
liver
36
limb
35
brain
33
musculature of body
30
heart
18
epithelium
18
ureter
13
vasculature
10
blood vessel
8
connective tissue
7
pancreas
4
artery
4
eye
2
adipose tissue
2
nerve
2
vein
1
spleen
Project
254
AMP
Genome assembly (visualization)
240
GRCh38
231
hg19
Lab
254
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
month_released!
March, 2019
biosample_type!
in vitro differentiated cells
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
254 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 39 more…
cell line
HepG2
44
Panc1
1
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
1
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
+ See 18 more…
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