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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
ChIP-seq
32
DNase-seq
Assay category
124
DNA binding
32
DNA accessibility
Target of assay
102
histone
102
histone modification
57
narrow histone mark
45
broad histone mark
19
control
3
RNA binding protein
3
transcription factor
Date released
72
November, 2017
38
October, 2019
30
June, 2019
14
October, 2017
2
November, 2018
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
156
Homo sapiens
Biosample type
145
tissue
11
primary cell
Organ
156
brain
138
liver
78
kidney
48
musculature of body
36
heart
36
limb
31
connective tissue
29
epithelium
26
pancreas
23
vasculature
19
blood vessel
18
ureter
10
adipose tissue
10
artery
4
eye
4
vein
2
nerve
1
pituitary gland
1
spleen
Project
156
AMP
Genome assembly (visualization)
120
GRCh38
71
hg19
Lab
156
AMP-T2D consortium
Audit category:
4
missing controlled_by
month_released!
March, 2019
BIOSAMPLE
ASSAY
156 results
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ChIP-seq
DNase-seq
tissue
brain
14
14
caudate nucleus
15
1
substantia nigra
16
layer of hippocampus
15
cingulate gyrus
14
+ See 37 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
astrocyte of the hippocampus
1
brain pericyte
1
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