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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ChIP-seq
28
DNase-seq
Assay category
110
DNA binding
28
DNA accessibility
Target of assay
103
histone
103
histone modification
53
broad histone mark
50
narrow histone mark
5
RNA binding protein
5
transcription factor
2
control
1
chromatin remodeller
Date released
84
May, 2021
24
June, 2019
15
August, 2017
6
November, 2017
4
August, 2021
4
October, 2019
1
November, 2020
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
138
Homo sapiens
Biosample type
415
tissue
138
primary cell
68
cell line
41
in vitro differentiated cells
Organ
26
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
6
connective tissue
6
liver
4
vein
3
heart
1
eye
1
musculature of body
Project
84
T1D
54
AMP
Genome assembly (visualization)
132
GRCh38
130
hg19
Lab
84
Kyle Gaulton, UCSD
54
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
1
inconsistent assembly
month_released!
March, 2019
BIOSAMPLE
ASSAY
138 results
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ChIP-seq
DNase-seq
primary cell
monocyte
84
skeletal muscle myoblast
14
1
hepatocyte
4
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
1
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