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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
324
ChIP-seq
13
total RNA-seq
9
RRBS
4
Hi-C
3
single cell RNA-seq
2
small RNA-seq
Assay category
324
DNA binding
18
Transcription
9
DNA methylation
4
3D chromatin structure
Target of assay
244
transcription factor
66
recombinant protein
62
control
37
RNA binding protein
18
histone
18
histone modification
15
chromatin remodeller
10
narrow histone mark
8
broad histone mark
2
other context
2
other post-translational modification
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
341
bam
324
fastq
299
bigWig
255
bed narrowPeak
255
bigBed narrowPeak
64
bed broadPeak
64
bigBed broadPeak
18
tsv
12
tagAlign
9
bed bedMethyl
9
bigBed bedMethyl
4
bed bed3+
4
hdf5
3
tar
Organism
355
Homo sapiens
Biosample type
315
cell line
tissue
40
primary cell
Organ
317
liver
19
epithelium
16
brain
11
vasculature
8
connective tissue
7
blood vessel
7
kidney
5
heart
3
musculature of body
2
adipose tissue
2
artery
1
eye
1
pericardium
Project
355
AMP
Genome assembly (visualization)
306
hg19
241
GRCh38
Lab
355
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
March, 2019
biosample_type!
tissue
BIOSAMPLE
ASSAY
355 results
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Clear Filters
ChIP-seq
total RNA-seq
RRBS
Hi-C
single cell RNA-seq
small RNA-seq
cell line
HepG2
315
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
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