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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
20
total RNA-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
74
DNA binding
20
Transcription
10
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
22
RNA binding protein
15
recombinant protein
10
histone
10
histone modification
7
chromatin remodeller
6
broad histone mark
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
551
February, 2021
334
November, 2017
303
May, 2021
272
August, 2017
260
May, 2020
210
June, 2019
207
October, 2019
164
July, 2018
97
May, 2019
85
July, 2019
80
November, 2018
72
December, 2017
72
September, 2018
65
April, 2019
49
April, 2018
47
August, 2021
47
October, 2018
40
May, 2024
31
February, 2018
31
November, 2019
30
December, 2018
26
January, 2019
20
March, 2020
20
May, 2022
14
October, 2017
8
January, 2018
7
August, 2020
5
December, 2019
5
November, 2020
5
September, 2017
3
August, 2018
3
February, 2023
3
June, 2018
3
September, 2020
Available data
146
bam
111
bigWig
110
bed narrowPeak
88
fastq
73
bigBed narrowPeak
20
tsv
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
csv
Organism
111
Homo sapiens
Biosample type
69
cell line
42
tissue
Organ
52
liver
38
pancreas
12
blood
12
bodily fluid
12
epithelium
6
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
111
AMP
Genome assembly (visualization)
110
GRCh38
102
hg19
Lab
111
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
month_released!
March, 2019
BIOSAMPLE
ASSAY
111 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
FAIRE-seq
cell line
HepG2
44
1
EndoC_BH1
11
1
GM12878
12
tissue
islet of Langerhans
19
liver
4
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
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