Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
single cell RNA-seq
36
total RNA-seq
29
ATAC-seq
12
ChIP-seq
2
Hi-C
Assay category
76
Transcription
29
DNA accessibility
12
DNA binding
2
3D chromatin structure
Target of assay
10
histone
10
histone modification
6
broad histone mark
4
narrow histone mark
2
control
RNA binding protein
1
transcription factor
Date released
715
February, 2021
403
August, 2017
394
May, 2021
369
November, 2017
341
May, 2020
318
August, 2021
314
October, 2019
214
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
115
May, 2019
108
July, 2019
90
December, 2017
76
April, 2019
73
September, 2018
67
November, 2018
65
October, 2018
64
March, 2020
60
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
39
February, 2018
35
May, 2024
33
December, 2018
25
February, 2020
24
January, 2019
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
58
bam
41
fastq
36
bed narrowPeak
33
bigWig
20
tsv
19
zippedFastqFolder
2
bedpe bed3+
2
hic
Organism
119
Homo sapiens
Biosample type
59
primary cell
40
tissue
15
cell line
5
in vitro differentiated cells
Organ
73
pancreas
34
epithelium
1
adipose tissue
1
connective tissue
Project
60
AMP
59
HPAP
Genome assembly (visualization)
59
GRCh38
58
hg19
Lab
60
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
21
inconsistent ontology term
month_released!
March, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
119 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
total RNA-seq
ATAC-seq
ChIP-seq
Hi-C
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
tissue
islet of Langerhans
19
19
1
adipose tissue(adipose white tissue)
1
cell line
EndoC_BH1
1
1
12
1
in vitro differentiated cells
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
Download