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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ATAC-seq
108
total RNA-seq
73
DNase-seq
71
ChIP-seq
66
single cell RNA-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
200
DNA accessibility
175
Transcription
71
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
40
histone
40
histone modification
24
broad histone mark
18
control
16
narrow histone mark
13
transcription factor
7
recombinant protein
2
RNA binding protein
Date released
132
August, 2021
74
February, 2021
70
June, 2019
47
September, 2023
45
October, 2019
35
February, 2023
23
April, 2019
14
May, 2023
5
July, 2019
5
May, 2019
3
December, 2019
2
February, 2020
2
March, 2020
Available data
235
bed narrowPeak
213
bam
186
bigWig
113
bigBed narrowPeak
74
tsv
72
bed bed3+
72
bed broadPeak
72
bigBed broadPeak
64
xls
62
txt
6
tagAlign
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
457
Homo sapiens
Biosample type
372
tissue
85
cell line
primary cell
Organ
777
liver
645
connective tissue
595
pancreas
489
adipose tissue
380
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
410
AMP
47
KPMP
Genome assembly (visualization)
303
GRCh38
195
hg19
Lab
266
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
2
Bing Ren, UCSD
Audit category:
15
inconsistent ontology term
7
audit script error
month_released!
March, 2019
biosample_type!
primary cell
BIOSAMPLE
ASSAY
457 results
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ATAC-seq
total RNA-seq
DNase-seq
ChIP-seq
single cell RNA-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
49
13
27
64
6
1
1
1
coronary artery
36
1
2
5
tibial artery
1
1
2
23
renal cortex interstitium
11
renal pelvis
10
+ See 13 more…
cell line
smooth muscle cell of the coronary artery
8
52
6
RCC 7860 HIF1a re-expression
1
4
RCC 7860 vector
1
3
1
RCC 7860 HIF2a over-expression
1
3
HEK293T
2
+ See 2 more…
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