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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
45
ATAC-seq
27
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
58
Transcription
49
DNA accessibility
27
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
narrow histone mark
5
transcription factor
RNA binding protein
Date released
66
February, 2021
35
February, 2023
22
October, 2019
3
July, 2019
2
August, 2021
2
February, 2020
2
June, 2019
2
May, 2019
Available data
95
bam
78
bigWig
67
bed narrowPeak
58
tsv
18
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
134
Homo sapiens
Biosample type
66
cell line
66
tissue
2
primary cell
Organ
859
pancreas
673
liver
641
connective tissue
474
adipose tissue
467
epithelium
342
heart
336
kidney
205
vasculature
201
blood vessel
166
brain
159
bone element
134
artery
107
limb
83
musculature of body
58
blood
58
bodily fluid
57
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
134
AMP
Genome assembly (visualization)
121
GRCh38
86
hg19
Lab
134
AMP-T2D consortium
month_released!
March, 2019
target.investigated_as!
narrow histone mark
RNA binding protein
BIOSAMPLE
ASSAY
134 results
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total RNA-seq
ATAC-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
8
6
tissue
coronary artery
1
36
2
2
tibial artery
1
1
19
2
pulmonary artery
2
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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