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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
73
ChIP-seq
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
399
Transcription
73
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
56
August, 2017
23
October, 2018
12
July, 2019
February, 2020
1
August, 2018
1
August, 2021
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
Available data
439
bam
421
bigWig
399
tsv
42
fastq
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
482
Homo sapiens
Biosample type
480
tissue
2
primary cell
1
in vitro differentiated cells
Organ
793
pancreas
767
liver
657
connective tissue
483
adipose tissue
421
epithelium
343
heart
279
kidney
270
brain
187
vasculature
181
blood vessel
147
bone element
111
limb
94
artery
93
musculature of body
68
blood
68
bodily fluid
41
nerve
37
embryo
32
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
483
AMP
Genome assembly (visualization)
421
GRCh38
420
hg19
Lab
483
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
March, 2023
February, 2020
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
483 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
6
12
1
1
omental fat pad
4
11
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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