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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
93
ChIP-seq
8
WGBS
ATAC-seq
3
DNase-seq
3
pCHi-C
3
small RNA-seq
1
RNA microarray
Assay category
401
Transcription
93
DNA binding
8
DNA methylation
3
DNA accessibility
Target of assay
38
histone
38
histone modification
32
control
24
broad histone mark
23
transcription factor
14
narrow histone mark
5
RNA binding protein
3
other context
3
other post-translational modification
Date released
386
February, 2021
56
August, 2017
23
October, 2018
12
July, 2019
10
November, 2018
7
December, 2018
7
January, 2019
2
February, 2020
2
March, 2020
1
August, 2018
1
August, 2021
1
June, 2019
1
May, 2023
Available data
462
bam
436
bigWig
402
tsv
65
fastq
22
bed narrowPeak
21
bigBed narrowPeak
8
tagAlign
7
bed bed3+
4
bed bedMethyl
4
bed broadPeak
4
bigBed bedMethyl
3
bigBed broadPeak
1
bedpe bed3+
Organism
508
Homo sapiens
Biosample type
506
tissue
2
primary cell
1
in vitro differentiated cells
Organ
794
pancreas
768
liver
659
connective tissue
485
adipose tissue
421
epithelium
346
heart
282
brain
279
kidney
190
vasculature
184
blood vessel
147
bone element
114
limb
96
artery
95
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
33
eye
24
spleen
22
vein
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
509
AMP
Genome assembly (visualization)
436
GRCh38
433
hg19
Lab
509
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
March, 2023
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
509 results
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total RNA-seq
ChIP-seq
WGBS
DNase-seq
pCHi-C
small RNA-seq
RNA microarray
tissue
adipose tissue
382
2
3
1
subcutaneous abdominal adipose tissue
36
3
spleen
20
2
1
1
subcutaneous adipose tissue
7
12
1
1
omental fat pad
5
11
2
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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