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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
49
ChIP-seq
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
49
DNA binding
6
DNA methylation
2
DNA accessibility
Target of assay
32
histone
32
histone modification
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
50
August, 2017
12
July, 2019
5
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
Available data
421
bigWig
420
bam
401
tsv
23
fastq
9
bed narrowPeak
8
bigBed narrowPeak
7
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
460
Homo sapiens
Biosample type
458
tissue
2
primary cell
1
in vitro differentiated cells
Organ
741
pancreas
660
liver
624
connective tissue
461
adipose tissue
391
epithelium
326
heart
267
kidney
251
brain
168
vasculature
163
blood vessel
147
bone element
97
limb
89
musculature of body
87
artery
62
blood
62
bodily fluid
32
eye
31
nerve
30
embryo
20
lung
20
vein
18
ureter
16
spleen
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
461
AMP
Genome assembly (visualization)
421
GRCh38
420
hg19
Lab
461
AMP-T2D consortium
Audit category:
12
missing controlled_by
month_released!
March, 2023
assay_title!
ATAC-seq
target.investigated_as!
control
BIOSAMPLE
ASSAY
461 results
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total RNA-seq
ChIP-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
1
subcutaneous abdominal adipose tissue
31
3
white adipose tissue
12
omental fat pad
5
3
1
2
subcutaneous adipose tissue
7
2
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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