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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
141
single cell RNA-seq
99
total RNA-seq
76
snATAC-seq
60
ATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
240
Transcription
136
DNA accessibility
47
DNA methylation
Date released
134
May, 2022
99
February, 2023
59
September, 2020
47
September, 2023
45
February, 2021
19
April, 2020
17
May, 2021
16
January, 2021
7
August, 2020
March, 2023
2
March, 2020
Available data
169
fastq
153
zippedFastqFolder
10
bigWig
6
tsv
Organism
444
Homo sapiens
Biosample type
345
primary cell
95
tissue
5
cell line
Organ
177
pancreas
149
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
321
HPAP
58
T1D
47
KPMP
19
LungMap
Genome assembly (visualization)
196
GRCh38
hg19
Lab
321
Klaus Kaestner, Upenn
56
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
2
AMP-T2D consortium
Audit category:
27
audit script error
1
inconsistent ontology term
month_released!
March, 2023
assembly!
hg19
award.project!
AMP
BIOSAMPLE
ASSAY
445 results
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single cell RNA-seq
total RNA-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
pancreatic beta cell
11
16
16
exocrine cell
39
peripheral blood mononuclear cell
8
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tissue
kidney
47
islet of Langerhans
7
6
11
lung
9
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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