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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
Assay category
83
DNA binding
Target of assay
52
histone
52
histone modification
34
transcription factor
28
narrow histone mark
24
broad histone mark
6
chromatin remodeller
RNA binding protein
Date released
38
August, 2017
32
September, 2018
8
November, 2017
3
October, 2017
2
November, 2018
Available data
83
bam
83
bigWig
83
fastq
46
bed narrowPeak
13
bed bed3+
13
bigBed narrowPeak
3
tagAlign
2
bed broadPeak
Organism
83
Homo sapiens
Biosample type
44
primary cell
24
tissue
10
cell line
5
in vitro differentiated cells
Organ
53
pancreas
21
epithelium
17
connective tissue
12
adipose tissue
10
liver
3
brain
Project
83
AMP
Genome assembly (visualization)
83
hg19
77
GRCh38
Lab
83
AMP-T2D consortium
Audit category:
83
missing controlled_by
Audit category:
4
inconsistent control run_type
3
inconsistent control read length
month_released!
March, 2023
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
primary cell
pancreatic endocrine cell
23
pancreatic ductal cell
13
pancreatic acinar cell
8
tissue
white adipose tissue
12
islet of Langerhans
9
brain
3
cell line
HepG2
10
in vitro differentiated cells
adipocyte
5
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