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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
226
ChIP-seq
ATAC-seq
29
DNase-seq
1
FAIRE-seq
Assay category
226
DNA binding
30
DNA accessibility
Target of assay
216
histone
216
histone modification
112
broad histone mark
104
narrow histone mark
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
114
May, 2021
47
June, 2019
32
September, 2018
30
August, 2017
19
October, 2019
6
November, 2017
4
May, 2019
3
August, 2021
1
November, 2020
Available data
535
bigWig
525
bam
377
fastq
258
tsv
256
bed narrowPeak
114
zippedFastqFolder
100
tagAlign
87
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
tar
Organism
256
Homo sapiens
Biosample type
776
tissue
394
cell line
256
primary cell
111
in vitro differentiated cells
2
stem cell
Organ
83
epithelium
46
pancreas
22
kidney
21
vasculature
17
blood vessel
15
connective tissue
13
vein
11
brain
9
musculature of body
6
heart
5
liver
3
eye
Project
172
AMP
84
T1D
Genome assembly (visualization)
249
hg19
222
GRCh38
Lab
142
AMP-T2D consortium
114
Kyle Gaulton, UCSD
Audit category:
23
inconsistent ontology term
Audit category:
32
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
month_released!
March, 2023
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
256 results
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ChIP-seq
DNase-seq
FAIRE-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
30
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic ductal cell
13
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