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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
51
total RNA-seq
34
single cell RNA-seq
22
snATAC-seq
Assay category
99
DNA accessibility
85
Transcription
DNA methylation
Date released
709
February, 2021
406
November, 2017
398
May, 2021
396
August, 2017
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
168
July, 2018
159
May, 2022
120
May, 2019
94
December, 2017
81
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
93
zippedFastqFolder
38
bed narrowPeak
25
tsv
24
bam
24
fastq
20
bigWig
7
txt
1
bed bed3+
Organism
184
Homo sapiens
Biosample type
93
primary cell
91
tissue
Organ
64
pancreas
41
liver
39
epithelium
12
brain
4
musculature of body
3
blood vessel
3
heart
3
limb
3
vasculature
2
adipose tissue
2
artery
2
connective tissue
1
eye
1
nerve
1
spinal cord
Project
93
HPAP
91
AMP
Genome assembly (visualization)
39
hg19
Lab
93
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
27
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
March, 2023
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
184 results
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ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
skeletal muscle tissue
1
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
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