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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
77
ATAC-seq
77
single cell RNA-seq
41
WGBS
32
total RNA-seq
22
snATAC-seq
Assay category
109
Transcription
99
DNA accessibility
80
DNA binding
41
DNA methylation
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
14
control
6
transcription factor
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
152
bam
134
bigWig
134
zippedFastqFolder
103
bed narrowPeak
68
fastq
64
bigBed narrowPeak
49
tsv
7
txt
1
bed bed3+
Organism
329
Homo sapiens
Biosample type
177
primary cell
152
tissue
Organ
143
pancreas
113
epithelium
57
heart
40
liver
23
kidney
2
connective tissue
2
musculature of body
Project
195
AMP
134
HPAP
Genome assembly (visualization)
153
hg19
113
GRCh38
Lab
134
Klaus Kaestner, Upenn
131
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
month_released!
March, 2023
BIOSAMPLE
ASSAY
329 results
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Clear Filters
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
total RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
3
25
pancreatic beta cell
13
3
16
pancreatic acinar cell
4
6
pancreatic delta cell
7
+ See 6 more…
tissue
liver
20
20
heart left ventricle
35
islet of Langerhans
18
12
kidney
23
heart right ventricle
13
+ See 2 more…
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