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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
78
ATAC-seq
41
WGBS
34
single cell RNA-seq
30
total RNA-seq
22
snATAC-seq
10
MeRIP-seq
1
DNase-seq
Assay category
101
DNA accessibility
80
DNA binding
64
Transcription
41
DNA methylation
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
19
control
6
transcription factor
5
nucleotide modification
4
RNA binding protein
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
109
bam
105
bed narrowPeak
90
bigWig
65
bigBed narrowPeak
24
fastq
7
txt
4
tsv
2
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
296
Homo sapiens
Biosample type
150
tissue
140
primary cell
6
cell line
Organ
114
pancreas
86
epithelium
57
heart
40
liver
23
kidney
6
connective tissue
2
musculature of body
Project
162
AMP
134
HPAP
Genome assembly (visualization)
110
hg19
70
GRCh38
Lab
134
Klaus Kaestner, Upenn
88
AMP-T2D consortium
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
6
inconsistent ontology term
1
audit script error
month_released!
March, 2023
BIOSAMPLE
ASSAY
296 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
MeRIP-seq
DNase-seq
tissue
liver
20
20
heart left ventricle
35
islet of Langerhans
18
6
4
kidney
23
heart right ventricle
13
+ See 2 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
osteoblast
1
4
1
pancreatic acinar cell
4
cell line
EndoC_BH1
6
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