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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
392
ChIP-seq
18
ATAC-seq
6
total RNA-seq
Assay category
392
DNA binding
18
DNA accessibility
6
Transcription
Target of assay
243
transcription factor
75
histone
75
histone modification
71
control
66
recombinant protein
46
broad histone mark
37
RNA binding protein
29
narrow histone mark
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
572
February, 2021
392
November, 2017
283
May, 2020
282
August, 2017
277
May, 2021
250
October, 2019
218
June, 2019
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
49
August, 2021
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
416
bam
354
bigWig
351
bed narrowPeak
348
fastq
312
bigBed narrowPeak
134
zippedFastqFolder
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
7
txt
3
tar
1
bed bed3+
Organism
416
Homo sapiens
Biosample type
314
cell line
93
tissue
9
primary cell
Organ
314
liver
78
brain
24
pancreas
6
epithelium
6
vasculature
3
blood vessel
Project
416
AMP
Genome assembly (visualization)
298
hg19
280
GRCh38
Lab
392
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
month_released!
March, 2023
BIOSAMPLE
ASSAY
416 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
cell line
HepG2
314
tissue
islet of Langerhans
18
6
layer of hippocampus
19
caudate nucleus
14
middle frontal area 46
13
substantia nigra
13
+ See 2 more…
primary cell
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
choroid plexus epithelial cell
3
See all biosamples
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