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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
57
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
Assay category
79
DNA accessibility
72
DNA binding
60
Transcription
41
DNA methylation
Target of assay
55
control
13
histone
13
histone modification
8
narrow histone mark
5
broad histone mark
4
transcription factor
2
RNA binding protein
Date released
272
August, 2021
202
February, 2023
180
May, 2022
164
February, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
May, 2023
11
November, 2020
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
September, 2018
Available data
416
bam
bigWig
351
bed narrowPeak
348
fastq
312
bigBed narrowPeak
134
zippedFastqFolder
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
7
txt
3
tar
1
bed bed3+
Organism
252
Homo sapiens
Biosample type
134
primary cell
71
tissue
47
cell line
Organ
104
pancreas
80
epithelium
67
liver
25
brain
2
musculature of body
Project
134
HPAP
118
AMP
Genome assembly (visualization)
19
hg19
1
GRCh38
Lab
134
Klaus Kaestner, Upenn
74
AMP-T2D consortium
24
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
Audit category:
1
audit script error
month_released!
March, 2023
files.file_type!
bigWig
BIOSAMPLE
ASSAY
252 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
islet of Langerhans
18
6
liver
20
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
+ See 4 more…
cell line
HepG2
47
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