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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
313
ChIP-seq
38
ATAC-seq
Assay category
313
DNA binding
38
DNA accessibility
Target of assay
236
transcription factor
74
histone
74
histone modification
66
recombinant protein
45
broad histone mark
35
RNA binding protein
29
narrow histone mark
15
chromatin remodeller
2
other context
2
other post-translational modification
Date released
313
November, 2017
210
June, 2019
189
October, 2019
142
August, 2017
133
May, 2021
106
August, 2021
97
May, 2019
73
November, 2018
72
December, 2017
65
April, 2019
65
February, 2023
46
September, 2018
45
October, 2018
40
May, 2024
38
May, 2022
37
November, 2019
30
December, 2018
27
May, 2020
23
February, 2021
21
January, 2019
16
February, 2018
12
October, 2017
7
July, 2019
5
September, 2017
3
March, 2020
2
November, 2020
Available data
416
bam
354
bigWig
351
bed narrowPeak
348
fastq
312
bigBed narrowPeak
134
zippedFastqFolder
78
tagAlign
70
bed broadPeak
64
bigBed broadPeak
7
txt
3
tar
1
bed bed3+
Organism
351
Homo sapiens
Biosample type
249
cell line
96
tissue
6
primary cell
Organ
269
liver
64
brain
18
pancreas
4
epithelium
4
vasculature
2
blood vessel
Project
351
AMP
Genome assembly (visualization)
297
hg19
280
GRCh38
Lab
313
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
Audit category:
10
missing controlled_by
Audit category:
19
inconsistent control read length
4
inconsistent control run_type
month_released!
March, 2023
BIOSAMPLE
ASSAY
351 results
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Clear Filters
ChIP-seq
ATAC-seq
cell line
HepG2
249
tissue
liver
20
islet of Langerhans
18
layer of hippocampus
16
caudate nucleus
12
middle frontal area 46
11
+ See 3 more…
primary cell
astrocyte of the cerebellum
2
brain microvascular endothelial cell
2
choroid plexus epithelial cell
2
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