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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
476
ChIP-seq
77
ATAC-seq
48
WGBS
35
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
9
DNase-seq
1
FAIRE-seq
Assay category
476
DNA binding
109
DNA accessibility
61
Transcription
48
DNA methylation
Target of assay
308
transcription factor
88
histone
88
histone modification
82
recombinant protein
77
control
58
RNA binding protein
50
broad histone mark
38
narrow histone mark
22
chromatin remodeller
5
other context
5
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
503
bam
436
fastq
434
bigWig
424
bed narrowPeak
385
bigBed narrowPeak
134
zippedFastqFolder
79
bed broadPeak
78
tagAlign
73
bigBed broadPeak
10
bed bed3+
7
bed bedMethyl
7
bigBed bedMethyl
7
txt
3
tar
1
csv
Organism
694
Homo sapiens
Biosample type
376
cell line
174
tissue
144
primary cell
Organ
408
liver
111
pancreas
93
brain
86
epithelium
15
blood
15
bodily fluid
9
spleen
6
vasculature
3
blood vessel
2
musculature of body
1
adipose tissue
1
connective tissue
Project
560
AMP
134
HPAP
Genome assembly (visualization)
391
hg19
359
GRCh38
Lab
496
AMP-T2D consortium
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
13
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
month_released!
March, 2023
BIOSAMPLE
ASSAY
694 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
DNase-seq
FAIRE-seq
cell line
HepG2
360
1
GM12878
15
tissue
liver
4
20
20
2
islet of Langerhans
18
6
layer of hippocampus
22
caudate nucleus
15
substantia nigra
15
+ See 10 more…
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
astrocyte of the cerebellum
3
+ See 3 more…
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