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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
ChIP-seq
7
DNase-seq
5
Hi-C
5
total RNA-seq
4
single cell RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
pCHi-C
Assay category
68
DNA binding
9
DNA accessibility
9
Transcription
5
3D chromatin structure
DNA methylation
Target of assay
51
histone
51
histone modification
31
broad histone mark
20
narrow histone mark
13
control
4
RNA binding protein
4
transcription factor
Date released
45
May, 2019
21
October, 2019
6
July, 2019
6
November, 2017
5
June, 2019
4
August, 2021
4
March, 2020
1
February, 2020
Available data
81
bam
69
bigWig
59
bed narrowPeak
58
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
10
tsv
9
bed bed3+
6
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
tar
Organism
92
Homo sapiens
Biosample type
58
tissue
34
primary cell
Organ
893
pancreas
784
liver
677
connective tissue
485
adipose tissue
471
epithelium
383
heart
350
kidney
284
brain
233
vasculature
228
blood vessel
159
bone element
artery
121
limb
90
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
92
AMP
Genome assembly (visualization)
71
hg19
62
GRCh38
Lab
92
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
month_released!
March, 2023
organ_slims!
artery
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
92 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
single cell RNA-seq
ATAC-seq
FAIRE-seq
pCHi-C
tissue
aorta
13
1
1
4
1
ascending aorta
16
1
2
thoracic aorta
16
2
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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