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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
30
DNase-seq
24
ATAC-seq
1
FAIRE-seq
Assay category
117
DNA binding
55
DNA accessibility
Target of assay
61
transcription factor
54
histone
54
histone modification
30
narrow histone mark
24
broad histone mark
20
RNA binding protein
11
chromatin remodeller
Date released
45
June, 2019
27
December, 2018
23
October, 2019
20
August, 2017
15
January, 2019
14
September, 2018
12
November, 2018
6
November, 2017
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1092
bam
1040
bigWig
599
fastq
505
bed narrowPeak
504
tsv
172
bigBed narrowPeak
153
zippedFastqFolder
144
tagAlign
61
bed bed3+
49
bed broadPeak
49
bigBed broadPeak
12
bedpe bed3+
10
hic
9
bed bedMethyl
9
bigBed bedMethyl
7
bed bedgraph
6
bed bed3
4
hdf5
4
txt
3
cool
2
csv
2
ibed
1
tar
Organism
172
Homo sapiens
Biosample type
tissue
107
primary cell
62
cell line
3
in vitro differentiated cells
Organ
liver
76
epithelium
54
blood
54
bodily fluid
29
pancreas
21
vasculature
18
connective tissue
17
blood vessel
17
kidney
13
vein
11
brain
9
musculature of body
6
heart
3
eye
Project
172
AMP
Genome assembly (visualization)
166
GRCh38
165
hg19
Lab
172
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
1
inconsistent control
Audit category:
2
inconsistent assembly
1
inconsistent control read length
1
inconsistent control run_type
month_released!
March, 2023
organ_slims!
liver
biosample_type!
tissue
BIOSAMPLE
ASSAY
172 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
+ See 22 more…
cell line
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
adipocyte
1
2
See all biosamples
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