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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
total RNA-seq
222
ChIP-seq
196
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
27
DNase-seq
17
pCHi-C
8
Hi-C
8
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
431
Transcription
280
DNA accessibility
222
DNA binding
56
DNA methylation
8
3D chromatin structure
Target of assay
196
histone
196
histone modification
105
broad histone mark
91
narrow histone mark
21
control
8
RNA binding protein
8
transcription factor
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
August, 2017
59
September, 2020
53
June, 2019
48
February, 2021
48
July, 2018
43
April, 2018
33
October, 2019
29
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
May, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
October, 2018
1
March, 2020
March, 2023
1
November, 2018
Available data
556
bigWig
539
bam
351
fastq
265
tsv
256
bed narrowPeak
153
zippedFastqFolder
88
bigBed narrowPeak
84
tagAlign
33
bed broadPeak
33
bigBed broadPeak
31
bed bed3+
8
bed bedMethyl
8
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
3
hdf5
2
csv
1
bed bed3
1
tar
Organism
1014
Homo sapiens
Biosample type
2186
tissue
1014
primary cell
311
in vitro differentiated cells
259
cell line
8
stem cell
Organ
377
epithelium
305
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
486
AMP
324
HPAP
204
T1D
Genome assembly (visualization)
568
hg19
482
GRCh38
Lab
451
AMP-T2D consortium
324
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
Audit category:
53
inconsistent ontology term
31
audit script error
Audit category:
32
missing controlled_by
month_released!
March, 2023
August, 2017
organ_slims!
liver
BIOSAMPLE
ASSAY
1014 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
54
85
15
1
1
Langerhans cell
85
48
pancreatic alpha cell
52
34
12
31
1
pancreatic beta cell
21
22
12
16
1
CD8-positive, alpha-beta T cell
4
33
2
1
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