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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
131
ChIP-seq
17
total RNA-seq
5
Hi-C
4
ATAC-seq
4
small RNA-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
Assay category
131
DNA binding
24
Transcription
5
3D chromatin structure
4
DNA accessibility
2
DNA methylation
Target of assay
101
histone
101
histone modification
85
narrow histone mark
33
control
16
broad histone mark
Date released
94
October, 2019
28
November, 2017
17
July, 2019
12
February, 2020
10
October, 2017
3
March, 2020
3
May, 2019
1
February, 2023
Available data
263
bam
237
bigWig
216
bed narrowPeak
bigBed narrowPeak
118
tagAlign
51
bed broadPeak
42
bigBed broadPeak
37
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
hic
1
bed bed3
1
bedpe bed3+
1
tagAlign bed3+
1
tar
Organism
168
Homo sapiens
Biosample type
149
tissue
19
primary cell
Organ
855
pancreas
656
connective tissue
481
adipose tissue
448
epithelium
433
liver
299
heart
250
kidney
159
bone element
159
brain
153
vasculature
151
blood vessel
116
artery
55
eye
49
musculature of body
38
limb
37
embryo
20
lung
17
nerve
16
skeleton
15
blood
15
bodily fluid
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
168
AMP
Genome assembly (visualization)
103
hg19
91
GRCh38
Lab
168
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
month_released!
March, 2023
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
168 results
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ChIP-seq
total RNA-seq
Hi-C
ATAC-seq
small RNA-seq
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
14
1
1
1
cingulate gyrus
8
layer of hippocampus
7
cerebellum (Hemisphere)
3
1
1
1
substantia nigra
5
1
+ See 72 more…
primary cell
endothelial cell of umbilical vein
7
2
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
choroid plexus epithelial cell
1
1
+ See 2 more…
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