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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
174
single cell RNA-seq
127
ChIP-seq
87
RNA microarray
52
ATAC-seq
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
3
snDrop-seq
2
MeRIP-seq
1
DNase-seq
Assay category
1227
Transcription
127
DNA binding
81
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
control
108
histone
108
histone modification
58
narrow histone mark
50
broad histone mark
19
transcription factor
2
RNA binding protein
2
nucleotide modification
Date released
537
February, 2021
189
August, 2017
165
August, 2021
143
May, 2020
120
July, 2018
70
July, 2019
64
October, 2019
47
September, 2023
40
May, 2021
38
March, 2020
32
February, 2023
28
May, 2022
25
February, 2020
20
November, 2019
19
April, 2020
15
May, 2023
12
November, 2017
8
January, 2021
8
October, 2017
6
April, 2018
6
November, 2018
5
March, 2019
3
December, 2019
2
January, 2018
2
November, 2020
1
April, 2019
1
August, 2022
Available data
1772
bigWig
1740
bam
1076
tsv
bed narrowPeak
561
bigBed narrowPeak
310
fastq
213
bed broadPeak
202
bed bed3+
186
tagAlign
176
bigBed broadPeak
157
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1604
Homo sapiens
Biosample type
1606
tissue
757
primary cell
225
in vitro differentiated cells
173
cell line
5
stem cell
Organ
510
connective tissue
451
adipose tissue
353
pancreas
202
liver
150
bone element
140
kidney
124
heart
48
brain
27
musculature of body
26
eye
20
lung
17
blood vessel
17
vasculature
13
limb
8
skeleton
5
gonad
5
nerve
5
ovary
4
artery
3
epithelium
3
spleen
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1511
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
975
hg19
973
GRCh38
Lab
1398
AMP-T2D consortium
78
Katalin Susztak, Upenn
47
KPMP
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
2
Rohit N. Kulkarni, M.D., Ph.D.
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
87
inconsistent ontology term
9
audit script error
Audit category:
22
missing controlled_by
month_released!
March, 2023
target.investigated_as!
control
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
1606 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
RNA microarray
ATAC-seq
snATAC-seq
WGBS
pCHi-C
Hi-C
small RNA-seq
RRBS
snDrop-seq
MeRIP-seq
DNase-seq
tissue
adipose tissue
382
2
3
1
islet of Langerhans
298
38
31
7
4
3
1
2
liver
167
1
20
3
1
1
1
1
kidney
49
64
1
11
6
1
1
bone element
84
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