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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
36
single cell RNA-seq
27
snATAC-seq
19
ATAC-seq
8
WGBS
7
ChIP-seq
4
RRBS
1
Hi-C
1
pCHi-C
Assay category
134
Transcription
46
DNA accessibility
12
DNA methylation
7
DNA binding
1
3D chromatin structure
Target of assay
control
5
transcription factor
2
RNA binding protein
2
histone
2
histone modification
1
broad histone mark
1
narrow histone mark
1
recombinant protein
Date released
76
February, 2023
45
February, 2021
38
September, 2020
24
May, 2022
6
August, 2017
4
November, 2017
2
November, 2018
1
August, 2018
1
December, 2017
1
December, 2018
1
March, 2019
1
October, 2017
1
September, 2018
Available data
bigWig
3086
bam
1817
bed narrowPeak
1597
tsv
1190
fastq
1042
bigBed narrowPeak
330
tagAlign
322
bed broadPeak
285
bigBed broadPeak
264
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
8
csv
7
bed bedgraph
5
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
201
Homo sapiens
Biosample type
162
primary cell
31
tissue
6
cell line
2
in vitro differentiated cells
Organ
84
pancreas
59
epithelium
8
liver
2
adipose tissue
2
connective tissue
2
musculature of body
1
brain
1
embryo
Project
159
HPAP
42
AMP
Genome assembly (visualization)
22
hg19
Lab
159
Klaus Kaestner, Upenn
24
Kyle Gaulton, UCSD
17
AMP-T2D consortium
1
Mark McCarthy, Oxford
Audit category:
27
audit script error
Audit category:
3
missing controlled_by
month_released!
March, 2023
target.investigated_as!
control
files.file_type!
bigWig
BIOSAMPLE
ASSAY
201 results
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total RNA-seq
single cell RNA-seq
snATAC-seq
ATAC-seq
WGBS
ChIP-seq
RRBS
Hi-C
pCHi-C
primary cell
Langerhans cell
34
27
pancreatic alpha cell
42
6
exocrine cell
39
pancreatic beta cell
11
pancreatic cell
2
+ See 1 more…
tissue
islet of Langerhans
6
19
liver
1
1
skeletal muscle tissue
2
adipose tissue
1
brain
1
cell line
HepG2
5
1
in vitro differentiated cells
pancreatic endoderm
1
white fat cell
1
See all biosamples
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