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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
total RNA-seq
74
ChIP-seq
1
pCHi-C
Assay category
205
Transcription
DNA accessibility
74
DNA binding
Target of assay
43
histone
43
histone modification
35
narrow histone mark
31
control
8
broad histone mark
Date released
666
February, 2021
406
November, 2017
400
August, 2017
365
May, 2021
281
October, 2019
241
May, 2020
237
August, 2021
168
July, 2018
May, 2019
101
May, 2022
100
February, 2023
100
July, 2019
94
December, 2017
80
April, 2019
78
November, 2018
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
31
June, 2019
30
January, 2019
25
February, 2020
15
October, 2017
14
November, 2020
10
December, 2019
9
April, 2020
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
March, 2019
Available data
277
bam
246
bigWig
204
tsv
50
tagAlign
43
bed narrowPeak
39
fastq
Organism
280
Homo sapiens
Biosample type
193
tissue
47
primary cell
39
in vitro differentiated cells
1
cell line
Organ
194
liver
13
embryo
Project
235
AMP
45
T1D
Genome assembly (visualization)
246
hg19
238
GRCh38
Lab
235
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
4
inconsistent ontology term
Audit category:
2
inconsistent control read length
month_released!
May, 2019
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
280 results
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Clear Filters
total RNA-seq
ChIP-seq
pCHi-C
tissue
liver
143
50
primary cell
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
+ See 22 more…
in vitro differentiated cells
pancreatic endoderm
4
9
definitive endodermal cell
2
3
embryonic stem cell
2
3
endocrine cell
2
3
posterior foregut
2
3
+ See 2 more…
cell line
HepG2
1
See all biosamples
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