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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1031
total RNA-seq
792
ChIP-seq
260
ATAC-seq
180
single cell RNA-seq
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1227
Transcription
792
DNA binding
292
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
539
histone modification
538
histone
291
narrow histone mark
247
broad histone mark
165
control
90
transcription factor
24
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
545
February, 2021
282
August, 2017
234
October, 2019
229
August, 2021
193
May, 2020
120
July, 2018
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
74
October, 2018
66
May, 2022
48
December, 2017
47
September, 2023
40
May, 2024
40
November, 2019
39
May, 2021
25
February, 2020
23
October, 2017
20
March, 2020
19
April, 2020
17
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1615
bam
1502
bigWig
1056
tsv
714
bed narrowPeak
367
fastq
291
bigBed narrowPeak
238
tagAlign
157
txt
64
xls
37
bed broadPeak
29
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2450
Homo sapiens
Biosample type
2459
tissue
1035
primary cell
654
cell line
388
in vitro differentiated cells
6
stem cell
Organ
544
connective tissue
495
pancreas
485
adipose tissue
356
liver
262
heart
231
kidney
208
brain
158
bone element
79
limb
77
blood vessel
77
vasculature
64
artery
49
eye
42
musculature of body
41
nerve
23
spleen
19
lung
16
skeleton
15
epithelium
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
1
spinal cord
Project
2363
AMP
47
KPMP
30
T1D
19
LungMap
Genome assembly (visualization)
1590
GRCh38
1501
hg19
Lab
2108
AMP-T2D consortium
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
month_released!
May, 2019
assay_title!
DNase-seq
pCHi-C
BIOSAMPLE
ASSAY
2459 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
RNA microarray
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
292
71
68
6
7
3
1
1
4
adipose tissue
382
2
3
3
liver
167
145
20
1
3
1
1
1
kidney
49
27
75
64
6
1
1
1
bone element
84
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