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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
14
total RNA-seq
2
DNase-seq
2
Hi-C
1
FAIRE-seq
GRO-seq
Assay category
39
DNA binding
14
Transcription
3
DNA accessibility
2
3D chromatin structure
Target of assay
27
histone
27
histone modification
14
narrow histone mark
13
broad histone mark
9
control
3
transcription factor
Date released
21
October, 2019
13
December, 2017
13
February, 2018
8
August, 2021
2
May, 2021
1
March, 2020
Available data
56
bam
43
bigWig
27
bed narrowPeak
26
fastq
14
tsv
13
bigBed narrowPeak
5
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
2
hic
1
bedpe bed3+
1
tar
Organism
58
Homo sapiens
Biosample type
28
in vitro differentiated cells
22
primary cell
8
cell line
Organ
944
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
372
heart
349
kidney
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
89
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
36
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
58
AMP
Genome assembly (visualization)
46
hg19
41
GRCh38
Lab
58
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
1
audit script error
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
month_released!
May, 2019
assay_title!
GRO-seq
BIOSAMPLE
ASSAY
58 results
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ChIP-seq
total RNA-seq
DNase-seq
Hi-C
FAIRE-seq
in vitro differentiated cells
pancreatic endoderm
18
4
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
cell line
H1-hESC
8
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