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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
ChIP-seq
93
single cell RNA-seq
68
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
162
Transcription
108
DNA binding
74
DNA accessibility
9
DNA methylation
3
3D chromatin structure
Target of assay
82
histone
82
histone modification
50
broad histone mark
32
narrow histone mark
14
transcription factor
12
control
8
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
May, 2019
20
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
3
May, 2021
Available data
199
bigWig
178
bam
170
bed narrowPeak
164
tsv
73
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
359
Homo sapiens
Biosample type
292
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
777
liver
645
connective tissue
598
pancreas
489
adipose tissue
359
heart
318
kidney
237
brain
158
bone element
149
blood vessel
149
vasculature
134
artery
118
epithelium
115
limb
75
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
36
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
359
AMP
Genome assembly (visualization)
241
GRCh38
163
hg19
Lab
319
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
month_released!
May, 2019
assay_title!
GRO-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
359 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
2
3
4
1
1
1
left cardiac atrium
40
18
1
heart
14
1
4
18
1
1
1
coronary artery
1
36
2
heart right ventricle
13
17
1
1
2
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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