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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
32
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
snATAC-seq
Assay category
34
DNA accessibility
32
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
5
control
Date released
43
June, 2019
26
August, 2017
10
July, 2019
May, 2019
5
March, 2020
2
February, 2020
1
January, 2018
1
May, 2022
Available data
62
bigWig
54
bed narrowPeak
50
bam
46
bed broadPeak
41
bigBed narrowPeak
33
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
88
Homo sapiens
Biosample type
74
tissue
14
primary cell
Organ
933
pancreas
791
liver
684
connective tissue
519
epithelium
491
adipose tissue
343
kidney
332
heart
258
brain
186
vasculature
180
blood vessel
159
bone element
136
artery
115
limb
88
musculature of body
61
blood
61
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
18
ureter
16
skeleton
10
lung
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
88
AMP
Genome assembly (visualization)
66
hg19
48
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
month_released!
May, 2019
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
88 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
4
1
1
1
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
8
1
1
skeletal muscle cell
1
2
1
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