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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
16
ChIP-seq
Assay category
16
DNA binding
Target of assay
591
histone modification
590
histone
350
narrow histone mark
320
control
239
broad histone mark
104
transcription factor
16
RNA binding protein
8
recombinant protein
5
nucleotide modification
2
chromatin remodeller
Date released
6
August, 2017
5
May, 2021
2
November, 2017
1
April, 2019
1
August, 2021
1
November, 2019
Available data
98
bam
96
bigWig
95
bed narrowPeak
89
fastq
bigBed narrowPeak
9
bed broadPeak
9
bigBed broadPeak
2
bed bed3+
1
tar
Organism
16
Homo sapiens
Biosample type
9
in vitro differentiated cells
4
cell line
3
tissue
Organ
4
connective tissue
3
liver
3
pancreas
1
epithelium
1
kidney
Project
16
AMP
Genome assembly (visualization)
8
hg19
7
GRCh38
Lab
10
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
month_released!
May, 2019
assembly!
hg18
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
in vitro differentiated cells
embryonic stem cell
5
adipocyte
4
cell line
HepG2
3
EndoC_BH1
1
tissue
islet of Langerhans
2
kidney
1
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